Protein Info for MPMX19_04162 in Azospirillum sp. SherDot2

Annotation: Transcription-repair-coupling factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1137 PF17757: UvrB_inter" amino acids 140 to 226 (87 residues), 48.1 bits, see alignment 3.1e-16 PF02559: CarD_TRCF_RID" amino acids 466 to 523 (58 residues), 44.6 bits, see alignment 3.6e-15 PF04851: ResIII" amino acids 591 to 749 (159 residues), 34 bits, see alignment E=8.5e-12 PF00270: DEAD" amino acids 593 to 754 (162 residues), 88.1 bits, see alignment E=1.8e-28 PF00271: Helicase_C" amino acids 793 to 896 (104 residues), 50.4 bits, see alignment E=7.3e-17 PF03461: TRCF" amino acids 993 to 1077 (85 residues), 68.4 bits, see alignment 1.8e-22

Best Hits

Predicted SEED Role

"Transcription-repair coupling factor" in subsystem DNA-replication or Transcription factors bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1137 amino acids)

>MPMX19_04162 Transcription-repair-coupling factor (Azospirillum sp. SherDot2)
MLDGFPVAEPAPDAPFPVPASSPTSLSVGSEGELAVRLAALARRPGGALLLARSDARATR
LARLVGDLFPDLDTILLPIDETAAGDRAAPSRAVLGRRAAGLMRLAERGEPASGRLVVAS
ADLALQRVPPPQAWAGGHFRLTRGMAYDEAAWRGWFARTGYVMDDRVDEPGEVAIRGAVV
EVFPGHCDRPVRCDIADGVVRDLRLYDPVSQRSVESIDELALGPVTDLIVGPEMLDRLAA
SLARLGSALPEGLRRELEEGRRPYAFDLQLPNVFDDCPLLLDLLPEALVVLDAGARDRIE
ARADDLAEAGIDRRIRRDDPCLLPVPPLERRLIDADALDEKLAARTLLPVEVTNGPVVEA
VRTERTLLRRSVGLVGEGRAVLLAARSGAGEADRLAERMSSALGRPVPRLDRWPEPPLAA
GDCAVLALRSAGGFTCDGMTVLVAPRHAEERGGEAQVRPPLAPSELSTGDFVVHLDYGIG
RLIGLETIASGDGEDDTADFLVLDYAHDDRLLVPTADFDRLWRHGSADTGAKLDSLKNAH
WLERRAVLEAEIGETAKGILREARRRARESAPVIDPPVDRMRRFGARFGFDPTEGQRRAI
QTVLDAMRQGQPMDHLVCADVGYGKTEVALRAAAAVAFAGHQVAVMAPTSVLARQHLEVF
RRRFAGFGIRLEPLTGAMTKTESDRVRAGLADGSVDIVIGTHALLSKDVRFQRLGLMVVD
EEQRFGATQKQALKRRIKGVHSLALSATPIPRTLQGALAGLRGLSIIDTPPARRRPVRTA
VTPRDPTTARAALLRELGRGGQVFCVTPRIADLGELEEWIRGLVPSACIAVAHGRLGAAA
LDDAVMGFVDGESDILLATPIIESGIDIPRANTLLLFRPDLFGLGQLHQLRGRVGRGAVQ
GYAYLLTDPDHPLEERAARRLGSLEVIESLGGGFVLSMLDLDQRGAGDLLGEDQSGHLRA
VGTELYQRILADALRALRRQPDARWDPEVTVAVPHGIPSAYIPEEELRIGLHRRIARTRE
AGELDALREEMEDRFGPLPVPMERLLAIAGLRCRCRALGIASLGCGPAGVAVTLRGERAS
ARAATLAKRSKGVLRAQDDRLSAALEAPDAESRLANASRVLDCIETIVRKAQRRKRE