Protein Info for MPMX19_04098 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 731 TIGR00229: PAS domain S-box protein" amino acids 29 to 157 (129 residues), 47.9 bits, see alignment E=7e-17 PF13188: PAS_8" amino acids 30 to 85 (56 residues), 29.1 bits, see alignment 2.7e-10 PF00989: PAS" amino acids 30 to 131 (102 residues), 27.5 bits, see alignment E=1.1e-09 PF13426: PAS_9" amino acids 48 to 148 (101 residues), 62.4 bits, see alignment E=1.7e-20 PF00512: HisKA" amino acids 198 to 263 (66 residues), 69.6 bits, see alignment E=7.7e-23 PF02518: HATPase_c" amino acids 310 to 436 (127 residues), 107.3 bits, see alignment E=2.4e-34 PF00072: Response_reg" amino acids 472 to 582 (111 residues), 60.7 bits, see alignment E=5.9e-20 PF01627: Hpt" amino acids 635 to 707 (73 residues), 37.7 bits, see alignment E=7.8e-13

Best Hits

KEGG orthology group: None (inferred from 85% identity to azl:AZL_a02970)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (731 amino acids)

>MPMX19_04098 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MTAPPSSATPPFDASPNATMADAAMSDAAMLAAVVETSGAGLVVADATRPDHPIVYCNRA
FLDMIGYEAGEVIGRNGDFLQGPDTDPDTAAAIRAAMAAARPLSVEVLNYRKDGSAFWNA
LTLRPVPEAGGVSDGRARWIAGSCADVTQSRRSQEELRAAEDQLTRLAAETFALAEKLDG
AREDAEAARIAAENASSAKSRFLAMMSHELRTPMTAVIGMGDLLMGTGLNDQQKAFVKTL
RSSAGTLMTILNDVLDFSKIEAGQLTLEEIDFSLPRLVDDVVQLFLVRAAAKGLSLSASI
ADDTPRHIRGDPTRLRQVLFNLVSNAIKFTDRGTIEIAVWSPDPPADPPADPPAGAAPAD
APVTLRFEVEDNGIGMTPEQRARLFDAFVQADVSTSRKYGGTGLGLAICKRLVEAMGGEI
TVASTPGRGSTFRFSILSRLAEAPPVGELGARPALPGAAETPEPTQVPLRLLLAEDNDIN
RMLVVAMMSRIGHRIDAVTDGRAALDALVAADYDALILDMEMPVLDGRSTARAIRRMDGP
VARIPIVGLSADALPEHRDGHLAAGLDAYLTKPIDWDQLNAVLVDLATRPQEGRVVPVPS
RPATEGGHFSALPLVDRVKLAELRLALGGEALDGMLQLLPETALRELTAIRSALQAGRPK
ELKQAAHTLAGLAANFGTPRMAAIARAINDSSTDTDKVAALLPLLETTVAATSSLVRDQV
DSIPSPLRGEG