Protein Info for MPMX19_04087 in Azospirillum sp. SherDot2

Annotation: Flagellum site-determining protein YlxH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 PF13614: AAA_31" amino acids 20 to 139 (120 residues), 39.8 bits, see alignment E=9.5e-14 PF10609: ParA" amino acids 20 to 64 (45 residues), 34.8 bits, see alignment 2.5e-12 PF06564: CBP_BcsQ" amino acids 21 to 259 (239 residues), 27.8 bits, see alignment E=3.5e-10 PF01656: CbiA" amino acids 22 to 239 (218 residues), 47 bits, see alignment E=4.9e-16

Best Hits

KEGG orthology group: K04562, flagellar biosynthesis protein FlhG (inferred from 98% identity to azl:AZL_a02870)

Predicted SEED Role

"Flagellar synthesis regulator FleN" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (265 amino acids)

>MPMX19_04087 Flagellum site-determining protein YlxH (Azospirillum sp. SherDot2)
MTDPVFPAALKNVRPLRGANVIAVASGKGGVGKTWFSITLSHALTKAGMNTLLFDGDLGL
ANVDIQLGFSPKNDLGAVINGEVTLAKAAQRFTDTGFDIIAGRSGSGTLAQLPSQRLSSL
RNDLLELARSYDRVVMDMGAGVDRTVRTLSGPAGITLVVTTDEPTSLTDAYAFIKLTHAT
NPSADLRIVVNMAQSVKDGERTYGTILKACQNFLKYKPALAGIIRRDLKVRDAIRNQTPL
LTRSPASDAARDVEAIVQRLLASAR