Protein Info for MPMX19_04073 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 25 to 43 (19 residues), see Phobius details amino acids 56 to 82 (27 residues), see Phobius details amino acids 94 to 111 (18 residues), see Phobius details amino acids 119 to 142 (24 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 184 to 207 (24 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details PF03707: MHYT" amino acids 66 to 124 (59 residues), 65.2 bits, see alignment 6.2e-22 amino acids 128 to 185 (58 residues), 56.7 bits, see alignment 2.9e-19 PF13487: HD_5" amino acids 297 to 455 (159 residues), 121.4 bits, see alignment E=5.2e-39 PF01966: HD" amino acids 301 to 423 (123 residues), 68.5 bits, see alignment E=9.4e-23

Best Hits

Predicted SEED Role

"Response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (490 amino acids)

>MPMX19_04073 hypothetical protein (Azospirillum sp. SherDot2)
MSIQLAGLCFTTASGLPFSHDHWLVALSYAVAAFASYSALDMAERMHRTDGAARMMWQGC
AAAALGGGIWAMHFIGMLALTIDTPIAYDPVKTLLSLVTSVAFVAVGFRIIQRRRSPATI
ALAGVIVGLGVATMHYLGMAAMVLPARIAYEPTLWSLSVAIAAAAAAAGLWLATRIHRLL
ERTLAALVMAVAVCGMHYTGMAALVVQVDPTLMAADGNLGDGVSSGPLAAVVAVAAFGLL
LLALVSAMADRKVSAASAREAAALRIANLELEAARLQLEANQREIIRRLCSAGEFRDNET
GQHVARMAQISHQLALAAGCTANYAAQVLEAAPLHDIGKIGVPDQVLLKAGRLEPEEWVI
MRRHASIGQRLLAGSGLPLLDLAAEIAGTHHEKWDGTGYPAGLRGTEIPLSGRIVAIADV
FDALLSARPYKEAWPLEKVVSFMREQAGHHFDPELVTVFLDKLDLMVAIRGRFVDEEHSA
PLLAEAGAAE