Protein Info for MPMX19_04069 in Azospirillum sp. SherDot2

Annotation: Putative 2-aminoethylphosphonate transport system permease protein PhnU

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 transmembrane" amino acids 29 to 48 (20 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 84 to 106 (23 residues), see Phobius details amino acids 114 to 139 (26 residues), see Phobius details amino acids 158 to 179 (22 residues), see Phobius details amino acids 219 to 242 (24 residues), see Phobius details amino acids 262 to 282 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 100 to 277 (178 residues), 51.9 bits, see alignment E=4e-18

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 96% identity to azl:AZL_a07820)

Predicted SEED Role

"Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)" in subsystem Molybdenum cofactor biosynthesis or Transport of Molybdenum (TC 3.A.1.8.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (295 amino acids)

>MPMX19_04069 Putative 2-aminoethylphosphonate transport system permease protein PhnU (Azospirillum sp. SherDot2)
MSACVQDAPLPHRPAARPPVRSGWAGEPLRLAALLAPAAAVFAAFFLLPLVRLILIGAGG
AAGWSAYLTTLADPGHLDSLVSTLALSAGVTLVTLAVSTVAGLFLVRNRFPGHALLVALM
TFPLAFPGVVIGFMVIMLAGRQGLIGTVTQALGAGKLVFAYSMAGLFLGYVYFSIPRVIL
TVMAAAEKLDPRLEEAARSLGASSWRVVADVILPALKPALISAGALCFATSMGAFGTAFT
LATRINVLPMTIYTEFTLQANIAAAAALSVLLGLITWAALAVARSVAGTSVAAAG