Protein Info for MPMX19_04020 in Azospirillum sp. SherDot2

Annotation: putative D,D-dipeptide transport system permease protein DdpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 101 to 127 (27 residues), see Phobius details amino acids 147 to 172 (26 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 219 to 244 (26 residues), see Phobius details amino acids 267 to 287 (21 residues), see Phobius details PF12911: OppC_N" amino acids 24 to 76 (53 residues), 34.9 bits, see alignment 1.1e-12 PF00528: BPD_transp_1" amino acids 117 to 299 (183 residues), 102.9 bits, see alignment E=1.8e-33

Best Hits

Swiss-Prot: 50% identical to Y1093_BRUSU: Putative peptide transport system permease protein BRA1093/BS1330_II1085 (BRA1093) from Brucella suis biovar 1 (strain 1330)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 96% identity to azl:AZL_a08160)

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>MPMX19_04020 putative D,D-dipeptide transport system permease protein DdpC (Azospirillum sp. SherDot2)
MASVPAGHGNVPLPSSAKAGNSRSPAALLLRQLFRRRLVVLSFLVMAAILAVALLAPWIT
PFNPAKMDILGRLKPPTAAHWFGTDEYGRDVLSRVMLGARLSLLVGLLVVVVATVLGTLL
GLAAGYIRPLDGLLMRLTDALMAFPDILLAIAFMAALGPSLYNVVLALGIVYTPRVARVV
RAACLVVREMPFIEAATALGASTPRIVFLHILPNLMSPILVQATFIFAYAILTEAALSFL
GVGVPPTTPTWGNMIASAQQYFQQADWLILFPGCAIVLTVLSLQIVGDGLRDALDPRLQK
AK