Protein Info for MPMX19_03954 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 transmembrane" amino acids 30 to 50 (21 residues), see Phobius details amino acids 54 to 94 (41 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 179 to 197 (19 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 260 to 290 (31 residues), see Phobius details amino acids 317 to 334 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 51 to 299 (249 residues), 148.7 bits, see alignment E=9.5e-48

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 98% identity to azl:AZL_a02530)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (357 amino acids)

>MPMX19_03954 hypothetical protein (Azospirillum sp. SherDot2)
MASVSIIPSGDYKTSYGSDTTIFPTRTSRNFAILGVVLLLACPAFMDRYWLSLLIQISYL
GIAALGLNILVGFTGQISIGHSAFFGFGAFASAWLSNSVGVPVALAIPLAGVITTLVGLL
FGMPAARLKGLYLAIATLAAQYILQDFFARADWFTGGTAGTIAEPLTIFGFAFDTDERFF
YVALVALVVMYILATNLMRTRDGRALVAVRDHYLSAEIMGINLTKYRTMSFGISAFYAGI
GGALYAHYLQFVSVEGFTILFSIQFLGMIIIGGLGSIMGTLMGTAFMVFLPEAMQALTKL
VSGTALDTALNLKDNIAFLREMSIGLVIILFLVFEPDGLAHRWKQIKAYWKLYPFSH