Protein Info for MPMX19_03940 in Azospirillum sp. SherDot2

Annotation: Acetyl-/propionyl-coenzyme A carboxylase alpha chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 667 PF00289: Biotin_carb_N" amino acids 1 to 110 (110 residues), 156.6 bits, see alignment E=1.5e-49 PF02786: CPSase_L_D2" amino acids 116 to 321 (206 residues), 256.5 bits, see alignment E=8.8e-80 PF02222: ATP-grasp" amino acids 132 to 291 (160 residues), 41 bits, see alignment E=8.7e-14 PF07478: Dala_Dala_lig_C" amino acids 142 to 290 (149 residues), 34.6 bits, see alignment E=7e-12 PF02655: ATP-grasp_3" amino acids 143 to 293 (151 residues), 23.4 bits, see alignment E=2.8e-08 PF02785: Biotin_carb_C" amino acids 335 to 443 (109 residues), 130.5 bits, see alignment E=1.4e-41 PF21139: BT_MCC_alpha" amino acids 457 to 579 (123 residues), 63.7 bits, see alignment E=1.1e-20 PF00364: Biotin_lipoyl" amino acids 597 to 660 (64 residues), 61.1 bits, see alignment E=3.6e-20

Best Hits

KEGG orthology group: K01968, 3-methylcrotonyl-CoA carboxylase alpha subunit [EC: 6.4.1.4] (inferred from 96% identity to azl:AZL_a02280)

Predicted SEED Role

"Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)" in subsystem HMG CoA Synthesis or Leucine Degradation and HMG-CoA Metabolism or Serine-glyoxylate cycle (EC 6.4.1.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.4.1.4

Use Curated BLAST to search for 6.4.1.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (667 amino acids)

>MPMX19_03940 Acetyl-/propionyl-coenzyme A carboxylase alpha chain (Azospirillum sp. SherDot2)
MFDKILIANRGEIACRVIRTARRLGIKTVAVHSEADAKAMHVQMADEAVCIGPAPVGESY
LRGDVILDVAKRTGAQAIHPGYGFLSENAGFAAACAEAGVVFIGPPIDAIRVMGSKAESK
RLMANADVPLVPGYHGTDQDFATLSAEADRIGYPVLVKASAGGGGKGMRVVRAANELADA
VAGAQREAKAAFGDDSLLLEKYLGRPRHVEIQVFCDTHGNGVYLFERDCSVQRRHQKVIE
EAPAPNLPDDLRRRMGEAAVAAAKAVNYVGAGTVEFLYEDGGFYFIEMNTRLQVEHPVTE
KITGLDLVEWQLRVASGAELPLRQDQLTRKGHAFEARLYAEDPQRDFLPAIGKLVRLRPP
AESDHVRVDTGVREGDSVTMYYDPMIAKLIVWDEDRDSALRRLRVALAEYEVVGVTTNVA
FLGAIAGHPAFKAVEIDTGFIERHRADLLPPPAPVADKALAAASLSVLLTRREEAQAALR
ARSDRYSPWLLANGWRLNEENHYDLRLMDGDTAREVTLHFRADGYEVAVDGGKPMPVTGV
SLSDGLLTATLDGMRTRATVVRQGLDLTVLIDGAVSRLTLDDPSARAAEQEGGSGRLTAP
MPGTVVRVLVEPGQSVEAGAPLMLLEAMKMEHTIKAPAAGTVSAVNFAAGDQVSEGVDLL
VLDIAEA