Protein Info for MPMX19_03934 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 25 to 29 (5 residues), see Phobius details amino acids 37 to 55 (19 residues), see Phobius details amino acids 67 to 89 (23 residues), see Phobius details amino acids 100 to 121 (22 residues), see Phobius details amino acids 129 to 155 (27 residues), see Phobius details amino acids 167 to 184 (18 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 230 to 253 (24 residues), see Phobius details amino acids 276 to 304 (29 residues), see Phobius details PF13593: SBF_like" amino acids 10 to 318 (309 residues), 329.7 bits, see alignment E=2e-102 PF01758: SBF" amino acids 70 to 217 (148 residues), 47.2 bits, see alignment E=2.2e-16

Best Hits

Swiss-Prot: 60% identical to Y2026_PSEAE: Uncharacterized protein PA2026 (PA2026) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K14347, solute carrier family 10 (sodium/bile acid cotransporter), member 7 (inferred from 93% identity to azl:AZL_a02220)

Predicted SEED Role

"Sodium - Bile acid symporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (331 amino acids)

>MPMX19_03934 hypothetical protein (Azospirillum sp. SherDot2)
MIRVPRPNMDGFTMALVATVGLATVLPVQGQFAQGVHWLAEAAIALLFFLHGARLPREEV
VAGMAHWRLHLLIFSLTFAAFPLIGWAVVETLPHSLLPPAVAIGVQFLCLLPSTVQSSIA
FTSMARGNVAAAVCSSTLSNISGILMTPLLVALFLKVQGSALSLDTLQTIAAQLLLPFVA
GQLLRRWIGAWAARHKTMLRFTDRGSILLVVYLAFSEAVVNGLWHQVPPAALGMVVVIDC
AILAVFLVGTTLLSRRLGFSRADEAVIVFCGSKKSLVSGVPMAGVLFAPATAGLVLLPVM
LFHQIQLMVCAVLARRYAEEGEARDALPATS