Protein Info for MPMX19_03930 in Azospirillum sp. SherDot2

Annotation: Inner membrane protein YdcO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 28 to 53 (26 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 95 to 129 (35 residues), see Phobius details amino acids 147 to 179 (33 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 217 to 243 (27 residues), see Phobius details amino acids 264 to 291 (28 residues), see Phobius details amino acids 308 to 330 (23 residues), see Phobius details amino acids 336 to 358 (23 residues), see Phobius details amino acids 367 to 393 (27 residues), see Phobius details PF03594: BenE" amino acids 23 to 399 (377 residues), 303.3 bits, see alignment E=1.2e-94 TIGR00843: benzoate transporter" amino acids 24 to 398 (375 residues), 241.9 bits, see alignment E=5.6e-76

Best Hits

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 56% identity to sro:Sros_0411)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>MPMX19_03930 Inner membrane protein YdcO (Azospirillum sp. SherDot2)
MTGSSSADQTVSDAPTAPGGRGLSPSALATGGLVALVGYASSVAVVIQGLAAVGADTAQI
TSGLVAVGFSMGLSAIWLAWTQRKPISVAWTTPGMALLAATGPVAGGFPAAVGAFLTVGA
LIMVAGLWRPLGRWIAAIPKPLANGMLAGLLLKLCLAPFMAIGQAPGLGLLVLATWAIVG
RFARLYAVPAAVAVALAAMAMNPPVSGALPADPWPTLSLVAPAFTWEALVGLALPLFVVT
MASQNIPGLAVLATFGYTPRVPPAFLATGFASALTAPLGAPTVNLAAITAAMCAGPDADP
RPERRWQAAVTGGVGYIALTALAAVTATLVTRSPPILIEAVAGLALIGAFGGSLLAAVQA
EEERIPALVTLLVTASGLSFFGVGSAFWGLLFGGAMHVLHRWRPAGA