Protein Info for MPMX19_03928 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 819 TIGR00229: PAS domain S-box protein" amino acids 84 to 206 (123 residues), 57 bits, see alignment E=1.1e-19 amino acids 215 to 325 (111 residues), 38.2 bits, see alignment E=6.9e-14 amino acids 328 to 443 (116 residues), 31.4 bits, see alignment E=9.3e-12 PF13188: PAS_8" amino acids 87 to 138 (52 residues), 20 bits, see alignment 2.1e-07 amino acids 216 to 269 (54 residues), 16.8 bits, see alignment 2.1e-06 amino acids 335 to 388 (54 residues), 20.3 bits, see alignment 1.7e-07 PF00989: PAS" amino acids 88 to 197 (110 residues), 40.7 bits, see alignment E=9e-14 amino acids 217 to 316 (100 residues), 23.4 bits, see alignment E=2e-08 amino acids 334 to 397 (64 residues), 24.2 bits, see alignment 1.1e-08 PF08448: PAS_4" amino acids 98 to 202 (105 residues), 39.5 bits, see alignment E=2.4e-13 amino acids 218 to 321 (104 residues), 57 bits, see alignment E=8.6e-19 amino acids 337 to 438 (102 residues), 47.8 bits, see alignment E=6.2e-16 PF13426: PAS_9" amino acids 99 to 198 (100 residues), 30.2 bits, see alignment E=1.8e-10 amino acids 228 to 317 (90 residues), 11.5 bits, see alignment E=0.00012 amino acids 342 to 434 (93 residues), 21.4 bits, see alignment E=1e-07 PF00512: HisKA" amino acids 456 to 521 (66 residues), 42.2 bits, see alignment E=2.8e-14 PF02518: HATPase_c" amino acids 566 to 675 (110 residues), 94.8 bits, see alignment E=1.9e-30 PF00072: Response_reg" amino acids 697 to 812 (116 residues), 41 bits, see alignment E=8e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (819 amino acids)

>MPMX19_03928 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MTKQPSVPNEPADHRTGAEPDLPALSNAELLARLEELERENARLQSALSTASSGHDDLLT
VTALNEDLRSAFNALERSRAAHADSERRLRAILDSAIGHAILTLAPDGRITSWNPGAVRI
LGWTEEEARGQPVDILFPPEEVAVGVPDALRVRALAEGRIQEERPFCHRDGFAVWGALTI
LPLQGDEEGFLWILHDRSDERRMEEAIADVRRRATDILDSIDEALVALDGDYRVIYQNRR
AEQLDHQSLSAMRGRLLWEVWPQLAGSDLEALCRKTMTERQPTSMEKRFDGEGTTLWLEI
RFLPTAEGVGCFFRDITMRKRAEEEARASHERAVKILESISDAFYAVDHDWRFTYINRKA
EQLWRRSRETLLGRRIWEAFPKVVGSEAFEAQKQAVREGREMTIEVLSPILGDWVEISIY
PNANGLSVYFRDITARRQAQQALLQAKETAEAADLAKGKFLAAASHDLRQPLQALLLFVD
VLKPHVQGSQGATALMHLGRGLDALKELLDSLLDMSRLDAGVVQPNIESVSVAPLFDHIA
ASYRPVAAAKGLELHVLSCNAAARTDRTLLTRMVRNLVENALRYTESGRIDIECRRAGAR
LLIEVRDTGIGIPPDHLERIWEEFHQVGNPERDRNRGLGLGLAIVRRLSLLLNHPVDVTS
KPGQGTSFVIALPLGRKVETAVTAAEAATAGRGRFAVVVDDDAIVLLGLETIFREWGYQV
LVAGSAQKAVEGLSRMGRRPDLIVADYRLREGRYGTEAVARIRALYDDPGSAPVPGLILT
GETGPECERDAAAHGLGIIHKPVTPRQLSHALGELLGTP