Protein Info for MPMX19_03887 in Azospirillum sp. SherDot2

Annotation: Photosystem I assembly protein Ycf3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 640 PF13432: TPR_16" amino acids 59 to 121 (63 residues), 17.4 bits, see alignment E=3.4e-06 amino acids 157 to 220 (64 residues), 33.8 bits, see alignment E=2.5e-11 amino acids 200 to 254 (55 residues), 34.5 bits, see alignment 1.6e-11 amino acids 269 to 312 (44 residues), 26.5 bits, see alignment 4.9e-09 amino acids 303 to 346 (44 residues), 32.7 bits, see alignment 5.6e-11 PF13181: TPR_8" amino acids 90 to 119 (30 residues), 18.6 bits, see alignment (E = 1e-06) amino acids 187 to 219 (33 residues), 22.4 bits, see alignment (E = 6.5e-08) PF07719: TPR_2" amino acids 187 to 219 (33 residues), 23.5 bits, see alignment (E = 2.7e-08) PF14559: TPR_19" amino acids 199 to 257 (59 residues), 32 bits, see alignment 8.5e-11 amino acids 273 to 324 (52 residues), 30.6 bits, see alignment 2.3e-10 amino acids 303 to 344 (42 residues), 27.1 bits, see alignment 2.9e-09 PF13431: TPR_17" amino acids 280 to 312 (33 residues), 24.3 bits, see alignment (E = 1.6e-08) PF13374: TPR_10" amino acids 293 to 320 (28 residues), 19.1 bits, see alignment (E = 6.6e-07)

Best Hits

Predicted SEED Role

"FOG: TPR repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (640 amino acids)

>MPMX19_03887 Photosystem I assembly protein Ycf3 (Azospirillum sp. SherDot2)
MGQLAKPEVGKGPAATLPDVRSMLASAVARHKAGDAAAGTLYRAILSAEPSHGDVLHLLG
VTALQAGAAEAASRWLRRALVVDRAQAYYRNSLGEAFRALGRPDKAREQYRLALTLNPAY
PESLANLHRQPLPGDNAPALLERFCRLRPATASELLAVADSRLLAGRLADARAAYRAAVA
LEPATVQAYVNLGATASREKNHAQAAAAYRRALRLSPDHPGAWNNLASAVWELNDGQGAV
RFCRRSVALKPDHPDPYANLGYVQRSQARNGDDFAEAATLCRRALRVNPSHVSALNNLGI
VNLDLGQLDEAERLFNRTLAAEPKHPDARFNLSLALLKAGRLKEGWDHYEARWETGQLPT
VNGQLRAWQGEPLNGATILLHAEQGHGDTLHFVRYAPLVAAQGGRVVLAVQPSLKRLVAG
MPGVAAVHALTDPFPKPEFHCPLMSLPRLLGTELGTIPGAIPYLYPPAEAIGKWLGQPLP
GAGLRVGLVWSGDPRPGLLRANLTDRRRSMSLHDLAPLAEVPDLRFVNLQMGGPAAQLTE
PPAGMDIHDPMGAITDFADTAALVMRLDLVITVDTSVAHLVGALGKPVWVMSRYDGCWRW
LQDRDDTPWYPTMRLFRQTAPGDWTTVIRRVADALRQLAA