Protein Info for MPMX19_03885 in Azospirillum sp. SherDot2

Annotation: Lipopolysaccharide assembly protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 628 PF13432: TPR_16" amino acids 8 to 71 (64 residues), 24.7 bits, see alignment E=1.7e-08 amino acids 47 to 105 (59 residues), 21 bits, see alignment 2.5e-07 amino acids 110 to 173 (64 residues), 26 bits, see alignment E=6.6e-09 PF13374: TPR_10" amino acids 74 to 100 (27 residues), 18.5 bits, see alignment (E = 1.1e-06) PF13844: Glyco_transf_41" amino acids 259 to 411 (153 residues), 109.9 bits, see alignment E=7e-35 amino acids 428 to 609 (182 residues), 84.5 bits, see alignment E=3.6e-27

Best Hits

KEGG orthology group: None (inferred from 57% identity to azl:AZL_f01630)

Predicted SEED Role

"TPR domain protein, putative component of TonB system" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (628 amino acids)

>MPMX19_03885 Lipopolysaccharide assembly protein B (Azospirillum sp. SherDot2)
METEETFAAALAEHEDGRFAAAEAGYRAVLVREPSHPQANNNLAVLLRRARRWGEAAVCL
RTAVAGWPEDPGVRSNLACTLGDQGRVAEAMAAMRVALALSPEAPGSWFNAGNLLRSVQN
PRGATIAYGRAIRLDPGMGEALSNLGDCQREDGALMQAVDSYLAAIRARPDLPQPFVNLG
EALKEQGRIAEAIGILQKGLEHHPDMAPMRSNLLLTLHYSPWIPPEVIARAHAHWNERHA
RPLFDGAKDFANDFANGRDPDRRLRVGYVSPDFCHHACAHFIEPLLREHDRGAVEVLCYA
TARRRDDMTLRMEALAAGWRSLADLDDADAAALIGLDRIDILVDLAGHTAGGRPLLFARR
PAPVQVTWLGYPDTTGMPAVDYRLTDAVADPPGGSDGRHAERLVRLPHGFLAFQPPDSAG
PAGNPPALANGFVTFGSLNNLAKVSPEVVRVWAALLARVPSARLLLKSPGFEDIAVRSAV
LKDFARRGVRPERIELLAPVPSVAEHLRVYDRLDVALDPFPYNGTTTTCEALWMGVPVIT
LAGSHHVARVGASLLSHCGLEELIQQDEAGYVDAASSLAGDLSRLSGLRRGMRKRLEGSA
LLDHRGFARSVEQAYRAMWRGWALGGRP