Protein Info for MPMX19_03830 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 41 to 63 (23 residues), see Phobius details amino acids 70 to 93 (24 residues), see Phobius details amino acids 130 to 153 (24 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 208 to 231 (24 residues), see Phobius details amino acids 259 to 277 (19 residues), see Phobius details amino acids 297 to 320 (24 residues), see Phobius details amino acids 332 to 352 (21 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 40 to 355 (316 residues), 453.7 bits, see alignment E=2.3e-140 PF02653: BPD_transp_2" amino acids 48 to 344 (297 residues), 132.8 bits, see alignment E=6.5e-43

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 96% identity to azl:AZL_a00240)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (382 amino acids)

>MPMX19_03830 hypothetical protein (Azospirillum sp. SherDot2)
MLLRFFLMGLDRKAGIVLTILAILAVAVPAMTLWVPADSPFHLSIFTVSLLGKYLCFALL
ALALDLVWGYCGILSLGHAAFFALGGYAMGMYLMRQIGPRGVYGNPELPDFMVFLNWKEL
PWYWLGFDHFWFAAIMVLVVPGALAFAFGWFAFRSRVTGVYLSIITQALTFALLLAFFRN
DMGFGGNNGLTDFKDILGYDIQADTTRVALFVATVAALALSYMIASGVIGSKLGKVLVAL
RDAESRVRFMGYDTESYKLFAWTLSACMAGVAGALYVPQVGIINPSEFAPASSIEAVIWV
AVGGRGTLAGAILGAVLVNMGKSYFTGALPELWLFALGGLFVAVTLFLPKGLLGLGAQLK
AKLPGRKTSALPNAQPADQKGA