Protein Info for MPMX19_03829 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 545 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 253 to 280 (28 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 312 to 332 (21 residues), see Phobius details amino acids 344 to 362 (19 residues), see Phobius details amino acids 393 to 412 (20 residues), see Phobius details amino acids 443 to 462 (20 residues), see Phobius details amino acids 475 to 500 (26 residues), see Phobius details amino acids 510 to 528 (19 residues), see Phobius details TIGR03409: urea ABC transporter, permease protein UrtB" amino acids 251 to 541 (291 residues), 425.8 bits, see alignment E=5.4e-132 PF02653: BPD_transp_2" amino acids 254 to 526 (273 residues), 156.4 bits, see alignment E=4.3e-50

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 94% identity to azl:AZL_a00230)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtB" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (545 amino acids)

>MPMX19_03829 hypothetical protein (Azospirillum sp. SherDot2)
MRRALRWLMAVCVVVATSTAAYAADPRAIDLRPLVQALGSGGYSGTEKALAQLSEAGDPA
AVPVIEALQAGDLYVRKADGTVVVARKAGDAFTLTDPLTRAALGDAPSAAVEKIRINNSL
RRAISASLGALTLMSPDAGVRRSAADAVFKSRDASALETLNAAIAKEQDKGVRAAMEQAR
AAILLTGEAASKMTDAEIQSATDTLTARGDRDALVLLNMVAGSGASDVTKKSAAAAVSTL
EQKLAFWAALQNLWYGLSLGSVLLLAAIGLAVTFGVMGVINMAHGEMVMIGAYTTFLVQE
FFRAHAPGLFDLSILVALPAAFLVSGGVGIVIERSVIRWLYGRPLETLLATWGLSLALQQ
AVRSIFGPTNREVGAPSWMSGAFELGGLTITYGRLWIVVFAFTVFAALLVALKRTWFGLS
IRAVTQNRPMANAMGIRTARVDALTFGLGSGIAGLAGVALSQIDNVSPNLGQGYILDSFM
VVVFGGVGNLWGTLVGALTLGTMNKFLEPYAGAVLGKILVLIFIILFIQRRPRGLFALKG
RAVEA