Protein Info for MPMX19_03697 in Azospirillum sp. SherDot2

Annotation: Inner membrane ABC transporter permease protein YdcV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 59 to 86 (28 residues), see Phobius details amino acids 98 to 120 (23 residues), see Phobius details amino acids 131 to 154 (24 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 200 to 218 (19 residues), see Phobius details amino acids 229 to 251 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 86 to 250 (165 residues), 49.2 bits, see alignment E=2.8e-17

Best Hits

KEGG orthology group: None (inferred from 94% identity to azl:AZL_b03830)

Predicted SEED Role

"Putative ABC transporter permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (265 amino acids)

>MPMX19_03697 Inner membrane ABC transporter permease protein YdcV (Azospirillum sp. SherDot2)
MLRWLNSLMAGLIGLVLAAPILVVAGVSLNAKRSLDFPPKGLSLAWYAEVFTDPGWRGAL
VASLVVAASSAALAVAIAFPLAWFIWRWRAPWARAFEVLGMAPFILPPVITALGFLSFWS
TFGQYGEPWTVVVSHAVFFVTLPLVTLSLGFGAVDRSFVEAASTMGADDRTVLRTVVMPL
VRPYMISGFAFAFVLSLNEYIVAYMVAGFTLETLPIKIFNALRYGYTPTMAAVTVLFVLL
TATIFGLIARFGDLPRLLGAWIRQD