Protein Info for MPMX19_03639 in Azospirillum sp. SherDot2

Annotation: Octopine transport system permease protein OccM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 33 to 38 (6 residues), see Phobius details amino acids 51 to 74 (24 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 186 to 211 (26 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 10 to 116 (107 residues), 78.7 bits, see alignment E=1.9e-26 PF00528: BPD_transp_1" amino acids 33 to 221 (189 residues), 86.3 bits, see alignment E=1.1e-28

Best Hits

Swiss-Prot: 55% identical to NOCM_AGRFC: Nopaline transport system permease protein NocM (nocM) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: None (inferred from 79% identity to azl:AZL_028040)

Predicted SEED Role

"Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1)" in subsystem Arginine and Ornithine Degradation (TC 3.A.1.3.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (229 amino acids)

>MPMX19_03639 Octopine transport system permease protein OccM (Azospirillum sp. SherDot2)
MNWTLMWDSLPRLLAALPLTLQLVALALAFGAVLAFATALLRLSGNRVAVALTSAYTFIF
RGTPLLVQIFLIYYGLSQIDLIRDSFLWPVLSQPMWCAILALALNTGAYTSEILRGAIET
VPQGQVEAARACGMSRVRLFRRIVLPVAIRQMLPAYGNEVILMVKASSLASTITMMEITG
VARRMIAQTFAVFEIFIVAGILYLLINFVATRLIKHAEWRMTPYLRARA