Protein Info for MPMX19_03623 in Azospirillum sp. SherDot2

Annotation: Ribose import permease protein RbsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 transmembrane" amino acids 36 to 53 (18 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 118 to 142 (25 residues), see Phobius details amino acids 150 to 169 (20 residues), see Phobius details amino acids 189 to 213 (25 residues), see Phobius details amino acids 244 to 262 (19 residues), see Phobius details amino acids 274 to 291 (18 residues), see Phobius details amino acids 298 to 315 (18 residues), see Phobius details amino acids 321 to 340 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 62 to 337 (276 residues), 129.3 bits, see alignment E=7.8e-42

Best Hits

Swiss-Prot: 37% identical to RBSC_HAEIN: Ribose import permease protein RbsC (rbsC) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 80% identity to sur:STAUR_0187)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>MPMX19_03623 Ribose import permease protein RbsC (Azospirillum sp. SherDot2)
MPSGPTPAPTSAPTPVTEAGTVSTAKPARRFDPHRFGPVVGLVLLLIVGTALNPDFATWD
NMMNVLTRTAFIGIISIGMCFVIISGGIDLSVGSMAALIAGGMILLMNALAGSVGSPVAV
VALGMLFALLLGGGFGLAHGYLITRGRIEPFIVTLGTLGIFRAVLTWLADGGAITLDNDL
SDAYGPVYYGSLLGIPVPVWVFLVVSVAGAVLLNRTAFGRYVQAIGSNEQVARFAAVDVD
RVKLLTYGLLGVCVGIATVLYVPRLGSASPTTGLLWELEAIAAVIVGGTSFKGGEGRIAG
TVIGAVLLSVISNILNLTSIISVYLNAAVQGCVIIAVAFLQRRRP