Protein Info for MPMX19_03615 in Azospirillum sp. SherDot2

Annotation: PTS system glucose-specific EIICB component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 594 transmembrane" amino acids 16 to 36 (21 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 78 to 101 (24 residues), see Phobius details amino acids 113 to 134 (22 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 193 to 209 (17 residues), see Phobius details amino acids 247 to 268 (22 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 331 to 350 (20 residues), see Phobius details amino acids 356 to 376 (21 residues), see Phobius details TIGR02002: PTS system, glucose-specific IIBC component" amino acids 5 to 478 (474 residues), 681 bits, see alignment E=1.1e-208 PF02378: PTS_EIIC" amino acids 13 to 318 (306 residues), 278.4 bits, see alignment E=7.1e-87 TIGR00826: PTS system, glucose-like IIB component" amino acids 380 to 463 (84 residues), 67.4 bits, see alignment E=1.1e-22 PF00367: PTS_EIIB" amino acids 407 to 439 (33 residues), 48.2 bits, see alignment (E = 5.6e-17) amino acids 514 to 547 (34 residues), 32.6 bits, see alignment (E = 4.4e-12)

Best Hits

KEGG orthology group: K02778, PTS system, glucose-specific IIB component [EC: 2.7.1.69] K02779, PTS system, glucose-specific IIC component (inferred from 92% identity to azl:AZL_b05000)

Predicted SEED Role

"PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component" in subsystem Trehalose Uptake and Utilization (EC 2.7.1.69)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.69

Use Curated BLAST to search for 2.7.1.69

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (594 amino acids)

>MPMX19_03615 PTS system glucose-specific EIICB component (Azospirillum sp. SherDot2)
MAMNPFAFLQKIGKSLMLPVAVLPVAGLLLGIGAANFEWMPPLLSMLMKNSGDVIFGNLP
LIFAIGVALGYTENDGVSAIAATIGYIVMLATLGVMTGVWGMEPKTIMGIKSMETGVFGG
ILAGGLAAAMFNRFYKIALPAYLGFFAGKRFVPIITALAAIVLGIVLSVVWPPVQEGINS
FSRWAAVNDPRLAATIYGFVERLLIPFGLHHIWNVPFFFEIGSFQNAAGQVVHGDIARYF
AGDPTAGILSGAFLFKMFGLPAAAIAMWHTAKPENRVRVGGIMVSAALTSFLTGITEPIE
FSFLFLAPVLYLIHAMLAATSQFIMNSLGAHMGFTFSQGGIDFVLFNALSPLSQKWWLVL
ILGPVYAAIYYVVFRYTILALNLKTPGREDATEESVSTATGSERARDLVLAFGGRGNISN
LDACITRLRVVVKDPARVDDGKLRGMGASGVLRVRDSVQAVFGTLSENLKTEMQEYLHSA
GAEADGPAAVAAPVAAKPVSAPAAAPVPTDRAARIAEALGGAGNIKELAAFATTRLRVEL
SDAGKANAEALKRAGVRAVMGLGANGLDLIVGNDADALVGAMTGMLPGGRRAAE