Protein Info for MPMX19_03484 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 transmembrane" amino acids 15 to 36 (22 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 123 to 146 (24 residues), see Phobius details amino acids 153 to 178 (26 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 226 to 245 (20 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 289 to 306 (18 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 117 to 212 (96 residues), 87.8 bits, see alignment E=2.9e-29 PF00528: BPD_transp_1" amino acids 141 to 318 (178 residues), 90.3 bits, see alignment E=6.5e-30

Best Hits

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 64% identity to smk:Sinme_3015)

Predicted SEED Role

"Amino acid ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (323 amino acids)

>MPMX19_03484 hypothetical protein (Azospirillum sp. SherDot2)
MYHDHVRRDRLTNKAWFLGVLALAVTVAGIVGGIGHTGLGAPFAAVVAALPGGESLATVW
AAIGLALVFTLNIHLIGRLGLRLQVAAVWLEVFSLFLVFFYSFDLSYSFILSKLSFLITQ
GVATTLYISAISIAIAFVLAMVGAIARLSNNGFAIAISSFYTSFFRGVPLLIQIYLIYLG
IPQLGYVIGAIPAGVAALSLCYGAYMTEIFRAGIMSIPKGQWEAARALGFGPMHTLVLIV
LPQSLRLIIPPTGNQFIAMLKDSSLVSVIGVWELMFLARTQGRDEFRHLEMLITAAGLYW
LISIVLEQVQARLERRLARGHRH