Protein Info for MPMX19_03434 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 PF05936: T6SS_VasE" amino acids 23 to 386 (364 residues), 147 bits, see alignment E=3.8e-47

Best Hits

KEGG orthology group: K11893, type VI secretion system protein ImpJ (inferred from 96% identity to azl:AZL_a01610)

Predicted SEED Role

"Uncharacterized protein ImpJ/VasE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (447 amino acids)

>MPMX19_03434 hypothetical protein (Azospirillum sp. SherDot2)
MTEARDIPEAIAWHDGMLLAPQHFQQQALRNERLLTYHAGHARPFHWGVVHFQVDRVNLV
SGLVRIRELEAIMPDGLIVHHAGDSTEPLEVDISAYADPVGQTQITIHLVIPQALADRAP
GPGEISRFLSVEGRPVPDLNGGEEVAIARLRPRLGLFATTGPNQKPPQKFVSMPVAQATF
RNDAFVLTDFVPPTLSVTANSALGRLGGEIVRRVREKALFLAERSGVGTGNAATELADAA
RTEIRSLVTGLPPLEAQLAVGVCHPFDVYLSLCTLAGHLSAFANGAVPAKLSRYDHDDPM
SAYGEVRDFILRMIDRVKEGVARIPFTFEAGMFGLVMEEAWLKGRLVIGVRGPAAATVGE
VAAWMENCIVASHSKLETLSGLRVKGADRIALDDSGESGVAAPRGVVPFEVVVDPRYIVP
GERLEIWNPDSIGSRFRPAEITLFVTA