Protein Info for MPMX19_03422 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 TIGR03355: type VI secretion protein, EvpB/VC_A0108 family" amino acids 13 to 485 (473 residues), 703.4 bits, see alignment E=7.3e-216 PF05943: VipB" amino acids 64 to 363 (300 residues), 453.1 bits, see alignment E=4.1e-140 PF18945: VipB_2" amino acids 373 to 484 (112 residues), 152.2 bits, see alignment E=6e-49

Best Hits

KEGG orthology group: K11900, type VI secretion system protein ImpC (inferred from 95% identity to azl:AZL_a01710)

Predicted SEED Role

"Uncharacterized protein ImpC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (489 amino acids)

>MPMX19_03422 hypothetical protein (Azospirillum sp. SherDot2)
MTTEMSVESTASASLLDRMMVEGKMAREEGQRPYARDLLSEFVDQVVAETGDAVAVDVVE
AINHRIAQIDELISLQLNEVLHHEDFQKLEATWRGLNYLVMNSETGKQLKIRVLNSSRKD
LQKDLDSAVEFDQSALFKMVYEAEYGTLGGTPYSVLIGDYEFGRHPQDISLIEKISNVAA
AAHAPFIAAASPKMFDMDSFSELSGPRDLSKIFETAEMTKWRSFRASEDSRYVALVMPHT
LLRLPYGPKTVPVEGVNFVEDVDGRDHSKYLWGNASWALGARITDAFAKYGWTAAIRGVE
GGGRVGGLPTHTFKTDEGDVALKCPTEIAITDRREKELNDLGFISLVHCKNTDYAAFFGG
QTANKPKVYNTNEANANARLSAMLPYMLVSSRFAHYLKVMLRDKIGSFTTRGNVQSYLNT
WIGNYILLDDDASQDMKARFPLREARVDVYEVPGRPGVYRANVFLRPHFQLEELSASIRL
VAELPAPEA