Protein Info for MPMX19_03417 in Azospirillum sp. SherDot2

Annotation: Protein ClpV1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 883 TIGR03345: type VI secretion ATPase, ClpV1 family" amino acids 12 to 864 (853 residues), 1109 bits, see alignment E=0 PF02861: Clp_N" amino acids 23 to 74 (52 residues), 30 bits, see alignment 2.1e-10 PF00004: AAA" amino acids 236 to 366 (131 residues), 38.9 bits, see alignment E=5.4e-13 amino acids 609 to 703 (95 residues), 26 bits, see alignment E=5.1e-09 PF17871: AAA_lid_9" amino acids 376 to 475 (100 residues), 104.8 bits, see alignment E=9.6e-34 PF07724: AAA_2" amino acids 603 to 774 (172 residues), 177.2 bits, see alignment E=1.3e-55 PF07728: AAA_5" amino acids 608 to 735 (128 residues), 40.3 bits, see alignment E=1.5e-13 PF10431: ClpB_D2-small" amino acids 780 to 852 (73 residues), 36.5 bits, see alignment E=1.8e-12

Best Hits

Predicted SEED Role

"ClpB protein" in subsystem Protein chaperones or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (883 amino acids)

>MPMX19_03417 Protein ClpV1 (Azospirillum sp. SherDot2)
MTADIKTLIGKLDRDGRKVLERAAALCVSNTHYDVEVEHLLLSVLRANSGVVAGILRHYN
VDAARVEAELNAALEKIRRGNTRTPAFSPRVPELLENALLTSVTHLDSPQILVPALLWAA
VACDSVRAVVGESAPSLLAIPRDRTATDLPELVRMLRSDTKLGEASPAAAGQIGAPLGEA
SSTPSPLASGQSMLDQYTVDLTAQARAGKIDPVIGRDREIRQVVDVMMRRRQNNPILVGD
PGVGKTAIVEGLALRIAEGDVPTPLRGTAIRTLDLGLLQAGAGVKGEFENRLKSIIKEVA
ASAVPTVVFIDEAHALIGAGGAAGQGDAANLLKPALARGEFRTIAATTWAEYKKYFEKDP
ALARRFQPVSVPEPDEAAAAAMLRGLVRRFEEHHGVRVLDDGIAAAVKLSARYIPARQLP
DKAISVLDTACARVAVARTSKPEAVETLEREDQMLAREAERLEREAGATHEARLAGIAAR
RRAVAEELAALTGRWNREAELVKAIDEALTAGRQADAVAAEERLAALRGDDALVPHRVDG
GVVAAVVSNWTGIPVGSMSKDDVDVVVGLEERMEARVVGQPQALRAIARAVRGYRAGLNE
PNRPIGVFLLSGPSGVGKTETSLALAELLNGGEQSLITINMSEYQESHAVATLRGAPPGY
VGYGSGGVLTEAVRRRPHSVILMDEVEKAHPDVLDMFYQVFDKGVLEDGEGVEVDFRNTL
ILLTSNLGDVELTELGRARLDAGEIREALEEGVEAISDPLRRRFRPSFLGRLTVVPYYPL
SERQVRAIAMMKVDKLRKRTEGNRAAALTVAPAALDALVRRAVHSDAGARMIDTLLSEFV
VPEVAMRILDQVAAGQPVGAIRVDCDSDGRFTVTVGAAEPALA