Protein Info for MPMX19_03416 in Azospirillum sp. SherDot2

Annotation: Actin cross-linking toxin VgrG1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 705 TIGR03361: type VI secretion system Vgr family protein" amino acids 13 to 510 (498 residues), 571.2 bits, see alignment E=1.9e-175 TIGR01646: Rhs element Vgr protein" amino acids 27 to 493 (467 residues), 405.4 bits, see alignment E=4.1e-125 PF05954: Phage_GPD" amino acids 31 to 328 (298 residues), 287.4 bits, see alignment E=2.7e-89 PF04717: Phage_base_V" amino acids 375 to 441 (67 residues), 60.4 bits, see alignment E=3.6e-20 PF22178: Gp5_trimer_C" amino acids 458 to 560 (103 residues), 92.6 bits, see alignment E=3.6e-30

Best Hits

KEGG orthology group: None (inferred from 88% identity to azl:AZL_a01770)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (705 amino acids)

>MPMX19_03416 Actin cross-linking toxin VgrG1 (Azospirillum sp. SherDot2)
MSERFSQAQQHLSISTPLGPDKLILRNIVGEERLSSLFSYRVTMLSSDDDIDFDQIVGKP
VTVTLTLGDGTSKRYINAIVGRIELTHIDDRDSSAHYEAELHPWLWMLTHSGDCRIFQEK
TVPEIVEAVIGSTGAIKAVLNGTYSTREYCVQYRETDYNFIARLLEEEGIFYFFEHADGE
HKLVLGDGDSAFTTSALVSTYEYRGHKAYDNEDNVITQLGVERRVTTKSVGVDSYHFETP
STDLYATAEGTAGTGTMNDYAVRHTVSADGEQIALVRQQALAFASQRIRGGGHCRGMEAG
TKITISGHRKDSLNAEMVLNSVRIDGATNRFVATFTGFPSAHPFRPLNTAQKPRIHSTQT
AKVVGKSGEEIWLDQYGRIKVQFHWDRLGTSDEKSSCWVRVAQGWAGKNYGIMFFPRVGQ
EVVVTFLDGDPDRPLVTGAVYNADQTVPYTLPDDSTKSTIKTQTSKNGTGKFNEIRFEDK
ADNEEIFVQAQKDMNIKVLNDLTRLVKHDEIETIENDSTIDVKNDRKLTVKNNHTITVSE
GNETHAISKGTRDLSVKGKETHLNNDDFEHTVDNNYTLTVKGNLTIDVTGDIVIKGKSIK
LTATSADIGIKAATGIEIKAGTSLDVKSGTAMTVKAGTGMEIDAGMGLDMKAGMGATLKG
GTTLDLKAGLALTAQGLTSTVKGSATAEVSGGGMLTLKGGVVMVN