Protein Info for MPMX19_03401 in Azospirillum sp. SherDot2

Annotation: putative ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 713 PF00005: ABC_tran" amino acids 47 to 205 (159 residues), 109.6 bits, see alignment E=6.9e-35 amino acids 404 to 554 (151 residues), 110.6 bits, see alignment E=3.4e-35 PF13304: AAA_21" amino acids 172 to 241 (70 residues), 30.7 bits, see alignment E=1.2e-10 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 255 to 329 (75 residues), 69.4 bits, see alignment E=3.4e-23 amino acids 605 to 690 (86 residues), 63.6 bits, see alignment E=2.2e-21 PF08352: oligo_HPY" amino acids 256 to 321 (66 residues), 64.3 bits, see alignment E=3.9e-21 amino acids 607 to 667 (61 residues), 48.1 bits, see alignment 4.3e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (713 amino acids)

>MPMX19_03401 putative ABC transporter ATP-binding protein (Azospirillum sp. SherDot2)
MMTAPQARPAVPPVVSPAIAPEPAPLLDVRGLTISYGNARGTLRAASDVSFAIRPGEVMG
LVGESGSGKSTVAMAILDLLGGGGRVDSGEILFDGVDLRRLSPSERQALRGDRIAAVFQD
PFTSLNPALTVGHQIAEPLIQHKGLSPRQAAARVQDLLAEVGIRDPRRVAAAYPHELSGG
MQQRALIATALGCEPKLLILDEPTTALDVTVEARIIELLAKLCDSHRLSALFVSHNLGIV
NRICQTVTVLYGGVVVETGQTGRVLSRPAHPYAKGLVAALPRITAERRHRLPSIPGTVAK
LAGPPAACVFAPRCPFAEETCRSQPQAMLTDGAWGGDGDGVRCWKADALAGTPWPDEDAG
IARGPRAAQPRSAPLVEVDHLRKIYGASRSILPWLRRSGTVAVEDVSFTVGRGEVVGVVG
ESGSGKSTIGRALLALTEPSAGTVTFDGADLTQQVRRGDQTLRRRAQLVFQNSAASLNPR
KTVGAAMDRPLVLAGRADAEERRKTVASLLTRVGLPAAYADRYPHELSGGERQRVNIARA
LATDPDFVVCDEAVSALDVSVQANILNLLAELRDEMGLSYLFITHDIAVVSHIADRVLVV
YGGTICEEGPIGRVLRPPYHPYTEALLSAVPRLAEDGQEAPRILLEDAAPAPGGRGCVFA
GRCPRKLGSVCDEQAPPVHETADGHRIACHIPLATLAERAAVFPELADGDTRH