Protein Info for MPMX19_03318 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 50 to 72 (23 residues), see Phobius details amino acids 89 to 110 (22 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details PF00924: MS_channel_2nd" amino acids 135 to 205 (71 residues), 58.3 bits, see alignment E=6.8e-20 PF00027: cNMP_binding" amino acids 354 to 437 (84 residues), 38.5 bits, see alignment E=9.3e-14

Best Hits

KEGG orthology group: None (inferred from 89% identity to azl:AZL_b00340)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (495 amino acids)

>MPMX19_03318 hypothetical protein (Azospirillum sp. SherDot2)
MKEGLRRAAGKLTAPFVITLVVLFGFYLGGDSFQGFGLAAMDSTRRVLKYVLGVAAFLSL
AVLVQRIVQYVIFDGIVASATGSPVPKLLSQMSGLVIFGIAVSACAGIVFEQDLTVLWAA
SGVAGLVLGMALRELLQDVFAGIALNIDRAIRIGEYIQIHRSGDSKISGQVLEISWRTTR
VRDFMGDLVIFPNSKFSAFTITNFSQPEANSFRFVTLTLDARVPLARATRILQAAALEAM
TGLAGPDTPVPWVEVKAIRLEGVEYAIFYKAEWRHLGNASPTILQTVLTHLAFAGLETAT
VLTDGPSAADGAFRQAGGAGPDTAALTALLRATALFRGVGDAPLRLLASHAAMRELPAGQ
VAIQAGEAGTSLYLVLEGLLSADAGRRSVRDPLPATLRPGDLFDPAILRGEAHGSTVRCR
TAVLLCEFGPDALQSLFGAGAGTMERVARNLVAGSASRSDEDEERVADTLRQMRHLFPAP
VGRQGPGIGPVANTG