Protein Info for MPMX19_03301 in Azospirillum sp. SherDot2

Annotation: Melibiose/raffinose/stachyose import permease protein MelD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 transmembrane" amino acids 26 to 51 (26 residues), see Phobius details amino acids 86 to 108 (23 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 147 to 164 (18 residues), see Phobius details amino acids 178 to 196 (19 residues), see Phobius details amino acids 217 to 236 (20 residues), see Phobius details amino acids 274 to 298 (25 residues), see Phobius details PF00528: BPD_transp_1" amino acids 99 to 301 (203 residues), 76.8 bits, see alignment E=9.4e-26

Best Hits

Swiss-Prot: 33% identical to YESP_BACSU: Probable ABC transporter permease protein YesP (yesP) from Bacillus subtilis (strain 168)

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 74% identity to atu:Atu2506)

Predicted SEED Role

"ABC-type sugar transport systems, permease components"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (310 amino acids)

>MPMX19_03301 Melibiose/raffinose/stachyose import permease protein MelD (Azospirillum sp. SherDot2)
MSILTSSDRVVGAASVGRTKRLRPSYWPFVVPALIVVIGVIVFPWVFTLWMSAMEWRIGE
EQRFVGLQNYARLFTDVRFLEAMVHTLVYTALSVLVPLVLGTAAALAFNTKLPARGLLRG
IFVMPMMATPVAIALVWTMMFHPQLGVLNYLLSLVGIGPLQWVYHPSTVILSLVLVETWQ
WTPLVMLIVLGGLAALPTEPYESAQIDGATAWQRFRYLTLPMIKPFLMVAVIIRSIDALK
SFDILYTITQGGPGTASETINLYLYSVAFTYYDIGYGSAIAVVFFVLIILLSLILLYLRQ
RSAWNTGDGQ