Protein Info for MPMX19_03288 in Azospirillum sp. SherDot2

Annotation: Spermidine/putrescine import ATP-binding protein PotA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 PF00005: ABC_tran" amino acids 24 to 165 (142 residues), 125.1 bits, see alignment E=3.3e-40 TIGR01187: polyamine ABC transporter, ATP-binding protein" amino acids 38 to 359 (322 residues), 375.1 bits, see alignment E=1.3e-116 PF08402: TOBE_2" amino acids 282 to 365 (84 residues), 48 bits, see alignment E=1.1e-16

Best Hits

Predicted SEED Role

"Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (369 amino acids)

>MPMX19_03288 Spermidine/putrescine import ATP-binding protein PotA (Azospirillum sp. SherDot2)
MEQQGFVEFSGVQKSYDGRTLVIEGLDLSIPKGEFLTMLGPSGSGKTTSLMMLAGFEAPS
RGEIRVAGKPIQNVPPHRRNIGMVFQNYALFPHMTIAENLAYPLKVRRMGRAETEGRVAR
ALDMVQMGALAQRRPSQLSGGQQQRAALARALVFEPDLVLMDEPLGALDKNLREHMQFEI
KHLHERLGVTMVYVTHDQAEALTMSDRIAVFNRGRVEQLATPAELYEQPATVFVAGFIGE
NNRLSGVLADRQGDSGTVRLEGGPVVRTRVAAGLEAGAAVTVSLRPERVRLVPAEAAGGA
GDGEGRGLFGHVSELIYLGDHIRVHLADGPAAGLVVKIPNNADHRHVRPGGRYGVEWGPA
DAIALPVGH