Protein Info for MPMX19_03278 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01547: SBP_bac_1" amino acids 59 to 290 (232 residues), 48 bits, see alignment E=2.7e-16 PF13416: SBP_bac_8" amino acids 59 to 312 (254 residues), 139.8 bits, see alignment E=2.5e-44 PF13343: SBP_bac_6" amino acids 100 to 306 (207 residues), 27.9 bits, see alignment E=2.5e-10

Best Hits

KEGG orthology group: None (inferred from 66% identity to agr:AGROH133_14227)

Predicted SEED Role

"ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (352 amino acids)

>MPMX19_03278 hypothetical protein (Azospirillum sp. SherDot2)
MTLYATRIVGCALAAGLWSAPALAQSPAQTGQLTVVGAGGVLQDAQRAVFFRPFADAGKV
QLTEDSYSGQMAKVRAMVDTGSVSWDVLQVEQNSLLSGCEEGLFEKIDWTAVGDRRDFID
EAYSECGVGAFVWSMVMTYDRSRIADGPKSWADFWNVQRWPGKRGLRQTAKMTLEIALLA
DGVPRGEVYRLLATPAGVDRAFASLDRLKPDILWWTSGAEPIERLASGDVAMAAAFNGRV
TAANRSGRTFALAWNGQVLGVDYWAIPKGAKNRDTAERFIAFASRPEVQARFPSHIAYGV
TNRKANLGIDPALAADLPTNPANFQLAVPLDTAFWADHGEALEARFANWRSR