Protein Info for MPMX19_03275 in Azospirillum sp. SherDot2

Annotation: HTH-type transcriptional regulator PgrR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 234 to 249 (16 residues), see Phobius details PF00126: HTH_1" amino acids 5 to 62 (58 residues), 72.2 bits, see alignment E=2.7e-24 PF03466: LysR_substrate" amino acids 88 to 297 (210 residues), 114 bits, see alignment E=6.5e-37

Best Hits

KEGG orthology group: None (inferred from 88% identity to azl:AZL_011180)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>MPMX19_03275 HTH-type transcriptional regulator PgrR (Azospirillum sp. SherDot2)
MQDLNDTIAFVKVVEEGSFTKAARRLRLPKTTLSRKVRDLEQRLGIQLLHRTTRRIGLTE
AGTVYFERCRRIAEELEQAESAVAQLRDAPRGWLRITTPPSFGMTVIAPLLPDFRSRYPD
VRIDLVLSHENLDLVARDIDLAIRMGALQDSSMAARKLGVLHRHVYAAPSYCAAHGLPVH
PDALIRHLTLANMTARRPSGFGWRLFRTDGGQPGDGVDAVIDPVMSADDPEMLVPTLLAG
GGLVLATDFAMRSYRSAGQVQRVLDGWKGADVDLHAVFPGGRIQPPKVRSFLDFLATRID
LGNGAGQWSAAEG