Protein Info for MPMX19_03250 in Azospirillum sp. SherDot2

Annotation: Glycine cleavage system transcriptional activator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00126: HTH_1" amino acids 11 to 70 (60 residues), 75.2 bits, see alignment E=3.3e-25 PF03466: LysR_substrate" amino acids 93 to 296 (204 residues), 102.3 bits, see alignment E=2.4e-33

Best Hits

KEGG orthology group: None (inferred from 53% identity to rlt:Rleg2_2922)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>MPMX19_03250 Glycine cleavage system transcriptional activator (Azospirillum sp. SherDot2)
MTSRFYRLPSLTALATFEAAARHRSIKRAAEELNVTPGAVSRQIKGLEEELGIPLFGRNQ
SGMALTGEGETLYATLADSFRRTADTLDAIRAGRPQRPVTLACTDAFAKCWLMPRMSDFW
QRFPDICVNHLVTDDAHGFRRAEVDLRIRYGQGAWPDEISVQLFEETIYPVASPAFAERH
RDIAPADLPSLPLLHVDWVDPDWTGWDEVLRRGNIPHAPLPGRRFSSFAVALQACQAGQG
IAIGWHRLVRDHVAAGTLVPLTGLTLRAPGAYHLTWNRNLAMGDAVCTLRDWIVGQAAAE
ATDTTPAA