Protein Info for MPMX19_03231 in Azospirillum sp. SherDot2

Annotation: Ferrichrome outer membrane transporter/phage receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 755 signal peptide" amino acids 25 to 36 (12 residues), see Phobius details PF07715: Plug" amino acids 101 to 204 (104 residues), 81.4 bits, see alignment E=6.9e-27 TIGR01783: TonB-dependent siderophore receptor" amino acids 103 to 753 (651 residues), 379.3 bits, see alignment E=2.1e-117 PF00593: TonB_dep_Rec_b-barrel" amino acids 311 to 724 (414 residues), 220.4 bits, see alignment E=8.6e-69

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 51% identity to azc:AZC_4433)

Predicted SEED Role

"Ferrichrome-iron receptor" in subsystem Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (755 amino acids)

>MPMX19_03231 Ferrichrome outer membrane transporter/phage receptor (Azospirillum sp. SherDot2)
MESEVGAAGSAGRLATGRHGRLKSFLLATTMAGLALLANQPAGLAQQATNGGQGSGQATS
GEAATGAGIVLDPISVQGVVGGTEGYVATRSAVGTKVETPLVEIPQTISVVTRKELDQRA
VQDFAGAVAYSPGIAVVDYPGGPGAPDFSMRGFRDFNLFGIYRDGLRAGFNNYDTNFEPY
GLERVDVVKGPSSVLFGQTSPGGVVNLTTKRPTDRPLHEIELQTGSYDRRQAAFDFGGPV
DGDGKVLYRLTGLGRLSDTQVDHAPDDRFYIAPAVTFKPTDKTKMTLLASYQKLKMSGAE
QSIPRDAMGQIGTDLFFGIPGYSDWKVQNTTVGYELEHEISPNWTFHQNARYMHSKVNFV
SAFSTAWPVELVNGRDYPVGVQDRPKTTETYLLDSNVQGKVQTGAVSHTILAGVDYGYYI
GRETRRNSLNELVIDVLNPSYPGTDFLYGNPWVDGKSNLTQIGAYLQDQLRYDNWILTLS
GRQDWVVDKETDNLSSSSQTARDHHFTGRVGLGYVFDNGIAPYASYATSFQPTTGTYAPQ
RGGGTFKPTTGTQYEVGVKYQPNGWNSFISASLYHITQQNVVTNDPVYSGFAVQDGEIRS
RGIELEGKMELTEELSLIASYAFVDAEITKDNPAVGSSASSVGLRPKGIPRHMASAWGDY
TFKSGPLTGLGFGVGARYVGSSKNAGNTETIPDYTLADAAVRYDLGALRSELQGASVALN
VSNLTDKKYYSAGFYDNTVLYGNRRQVLATLKYSW