Protein Info for MPMX19_03185 in Azospirillum sp. SherDot2

Annotation: IS3 family transposase ISMdi5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 PF13276: HTH_21" amino acids 45 to 100 (56 residues), 60.2 bits, see alignment E=3.8e-20 PF00665: rve" amino acids 126 to 221 (96 residues), 90.6 bits, see alignment E=1.4e-29 PF13683: rve_3" amino acids 212 to 278 (67 residues), 46.2 bits, see alignment E=6.4e-16 PF13333: rve_2" amino acids 230 to 280 (51 residues), 49.1 bits, see alignment 1e-16

Best Hits

Swiss-Prot: 48% identical to YIS2_SHISO: Insertion element IS600 uncharacterized 31 kDa protein from Shigella sonnei

KEGG orthology group: None (inferred from 73% identity to mrd:Mrad2831_0378)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (286 amino acids)

>MPMX19_03185 IS3 family transposase ISMdi5 (Azospirillum sp. SherDot2)
MRFRFIEDHRDEFPTRLMCSVLGVSSSGYYAWRGRPESQRAAANRQLLVEVRRVHGRHHG
RYGSPRVHAALRAEGVAASRGRVARLMRRHGIRGAASRRFRPVTTNSRHGLPVAPDLLGQ
AFLVAEPNRVWLADITWLPTAEGWLYLAAVLDLATRKIVGWAMRDHMRAELATSALVMAI
QRQRPPVGLIQHSDRGSQYASRNYRDLLQAAGMRQSMSRKGCCYNNAPMESFFHTLKVEL
VHRTRFETRDQARREVFAYIETYYDRQRAHSAIGYITPEQAELRSA