Protein Info for MPMX19_03167 in Azospirillum sp. SherDot2

Annotation: D-alanine--D-alanyl carrier protein ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1372 transmembrane" amino acids 662 to 686 (25 residues), see Phobius details amino acids 698 to 722 (25 residues), see Phobius details amino acids 738 to 756 (19 residues), see Phobius details amino acids 895 to 918 (24 residues), see Phobius details amino acids 936 to 963 (28 residues), see Phobius details amino acids 985 to 1004 (20 residues), see Phobius details amino acids 1142 to 1170 (29 residues), see Phobius details amino acids 1178 to 1204 (27 residues), see Phobius details amino acids 1216 to 1238 (23 residues), see Phobius details PF00501: AMP-binding" amino acids 55 to 396 (342 residues), 301.1 bits, see alignment E=2.1e-93 TIGR01733: amino acid adenylation domain" amino acids 74 to 476 (403 residues), 421.8 bits, see alignment E=2.7e-130 PF13193: AMP-binding_C" amino acids 460 to 534 (75 residues), 37.7 bits, see alignment 6.7e-13 PF00550: PP-binding" amino acids 574 to 629 (56 residues), 32.4 bits, see alignment (E = 1.8e-11) TIGR02353: non-ribosomal peptide synthetase terminal domain of unknown function" amino acids 660 to 1354 (695 residues), 614.9 bits, see alignment E=1.9e-188

Best Hits

KEGG orthology group: None (inferred from 94% identity to azl:AZL_a07620)

Predicted SEED Role

"FIG00740755: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1372 amino acids)

>MPMX19_03167 D-alanine--D-alanyl carrier protein ligase (Azospirillum sp. SherDot2)
MTLLTARANGPTDVSPAGQSTISAPWTATPTVPTLSGRVDPSLLRDELLSDIPQATAAAH
PDRTAIVYEGRRVTYAELDARANRVAHGLRARGIGPGCFVGLWMARSLDLHVALLGILKA
GAAYLPFDADAPAERVAVSLTDCAAPAILIDLVTGTKAATLAASGADVQVLRIGDVLSDS
EEPFDLRADGVTPDSPAYAIYTSGSTGKPKGIVISHRNICHYLRAANSVYGITADDVAFQ
GASVAFDLSLEEIFVPYLAGATLWVASRQVLDEADRLADVLTEAGVTVLDTVPTLLAMLP
KDIPSLRVVILGGEACPPAVASRWCRPGRRLFNSYGPTEATVVATVAEVHPDTPVTIGRP
IPNYTCYVVDEALQPVAPGTQGELLIGGPGVAQGYLGRPELTAEKFIANPFRSGTPGPHP
DPLLYRSGDAVSVDADGNLRFHGRIDDQVKIRGFRLELGEIEAKLTDLAGIAQATVVLRT
DNGLDRLVAFLVAQPGASLDKTTLRDALRAQLPAYMVPAHYEQVAELPRLTSGKADRKTL
QAMALTEDAGSGEQEEPRSPTEATLLEAARRVFPGQSIPLEADFFLDLGGHSLLAARFVS
AVRETAGLASLTLQDVYGARTLRAMAERLEAKAPAAHGAKPADLSFDPPPLARRLLCGLA
QAAALPIILALMTVQWLGVFVSYMLLSGEDAGILGEITTMFGVYVVINIATVAIAVAAKW
LIIGRTKPGRYPLWGVYYYRWWLAQRFIALVHLKWFQGSPVMRLLLRALGAKVGADAMIG
EFESGAIDLVSIGRGASTGGKVKMANAEVIGNELVIGTIEIGEDAYIGTSCVIGHDAVVG
KSTELADLTALAAGTHTGDYEQWDGSPARKVGTVDRAALPEEPRAGVVKRAAQTLIYLVA
LVGLPPVALIPIFPAFYLFDKLDAWMGGVFKVNYLYYVPAIAWPTAMFLVAFTVLLIAAM
RWIVLPKVEAGSYSVHSWFYVRKWVVALATEVMLETLSSLYATVYMRAWYRLMGAKIGRD
AEISTNLAGRYDLVEIGEKCFIADEVVLGDEDIRRGWMHLQPVKTEARVFVGNDAVVPPG
ASIPTGTLIGIKSKPPANAEMQAGDTWFGSPPIKLPVRQKFDNVSANWTFEPSRARRLGR
AVFEAFSLSMPSMLFITFGTFAVEFFAPAILDQRWGAFAWQFLAVSVAIPTAMVLVVALV
KWLLMGRYAPTMKPMWSWWAMRTEAVAVLYWGLAGKVLLDHLRGTPMLPWVLRLFGTKFG
QGVYMDTTDITEFDCVSVGDYSAINALSALQTHLYEDRVMKVGRVSVGTGVTVGAGATVL
YDTHVGDFARLGPLTLVMKGEEIPAHGEWVGAPAEPAPQAHAAVDKRVKAAA