Protein Info for MPMX19_03162 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 493 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 190 to 210 (21 residues), see Phobius details PF13675: PilJ" amino acids 40 to 100 (61 residues), 31.9 bits, see alignment E=1.9e-11 PF00512: HisKA" amino acids 262 to 327 (66 residues), 47.3 bits, see alignment E=2.6e-16 PF02518: HATPase_c" amino acids 372 to 481 (110 residues), 88.9 bits, see alignment E=4.8e-29

Best Hits

KEGG orthology group: None (inferred from 86% identity to azl:AZL_a07670)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (493 amino acids)

>MPMX19_03162 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MIPIGTTTARWMTLRYALALTLIALGTLAGFVMTERVIGQHERMLEVVNVSGRQRMLSQR
TALLVEQLKSATDPAVRADLGRRLDEATGMFEATHRRLSGQAGPEEGPPLGPPPHDLFYS
GPDPLDPVVTGHIAALRRVIAAASAGRPPDPAEADRITAQALGPLLDRLEDMVALYQEEG
EAGFQTLHRLGLAALLITLLILAVEAMAIFRPMTRQVRRQFTEILRMAETIERANATLEQ
QVRERTAELHTAKTAAEQAHRAKSRFLAHASHDLQQPLQAIGMFTGMLERQPQSAKAAAL
LTDLKAAQRSMRDLLNAILDISKLESGVVSPKPADLPLSPLLDQLEAEFAGQAEAKGLRL
RAIPTDAVVRSDPALLERIVRNLIANAIRYTESGGVLVGCRTRGDTLWVEVYDTGRGIAE
PDRQRIFEEFVQLDRPDRDRSEGIGLGLAIVERLARLLGHPVTVRSVEGRGTVFTVGVPL
AGRDCRVTGNDLM