Protein Info for MPMX19_03114 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 37 to 60 (24 residues), see Phobius details amino acids 90 to 117 (28 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details amino acids 184 to 201 (18 residues), see Phobius details amino acids 234 to 255 (22 residues), see Phobius details amino acids 277 to 299 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 109 to 275 (167 residues), 45.6 bits, see alignment E=3.6e-16

Best Hits

KEGG orthology group: None (inferred from 94% identity to azl:AZL_b05490)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (309 amino acids)

>MPMX19_03114 hypothetical protein (Azospirillum sp. SherDot2)
MSAPLPTEAAGRPAALPRSRGGDGAPALPAARTVPDWLWGVLLVLPALAMVALFFLYPLG
LSAVSAFQGRDGGWTLANIAKAFELYSLDMAFTLAIVLLSSALVAVLSVAIGGYLTLGEN
RLAVTLLRWLYRWPLFIPFIVAAQMMRSFLAKNGLMNNLLIGGGVIEPLQAASLLDWRGV
VVTFVWKQTPFVALMVAGAMASLDRSTIEAARDLGAGRLRILAEIVVPQVRPTLVVGLIL
SFVTMLSVMSVPMMINPNSPTMITVDMAYRINAHGDYGVANALGFVSYAMAGLVGWFYLR
HGVRQGGAR