Protein Info for MPMX19_03111 in Azospirillum sp. SherDot2

Annotation: Putative fatty-acid--CoA ligase FadD21

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 557 transmembrane" amino acids 55 to 75 (21 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details PF00501: AMP-binding" amino acids 31 to 408 (378 residues), 164.1 bits, see alignment E=2.2e-52

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (557 amino acids)

>MPMX19_03111 Putative fatty-acid--CoA ligase FadD21 (Azospirillum sp. SherDot2)
MTGLLNWLDHGGTAGDPLWHFPAEGMDRRLSELRTRSGVLAAGLAARGIRPGDRVVMLLD
TGSAAICLLLALWQLQAVPVPLRPWSGAVLETASERAGGFLRFLLEVTRRSDARLVVTDR
PAVVPQLDPLLTTVEALEAPLERSPPTGGDGECRADGLALIQFSSGSTGQPKGVMVTHAM
AMAQLRQLADNYAAAGSGRPPRSIASWLPFYHDMGLFIGILLPLFTGADAMVAPPAWYMR
NPARWFAAMAARGSDLNFSTSSVLAATLRGVRRLHGRGCDLSALILYVAAEKISPAVLDE
AAAVLAPLGMPPSQLRAGYGMAEYTLGCTHSREPGLRRLRVRIAPGGRVLADGGNGCGGG
GETLDLVSVGRPNDACDLVVRDEAGCPLGEMRLGEITVAGPCLTPGYWRDEAMTQRALGR
GWMRSGDLGFLHDGELFFVARKDEMLVVGGRNVIPADVELEVESLPFVGPGRAVLFAADE
PGGPRQVLLVEGNATSPPPVVSGRLTAIRRCILDGFGFVPTDIAVVPKGTIEKTSSGKKR
TAVIRRRWQAGAIPQLA