Protein Info for MPMX19_03098 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 transmembrane" amino acids 12 to 39 (28 residues), see Phobius details amino acids 138 to 160 (23 residues), see Phobius details amino acids 192 to 217 (26 residues), see Phobius details amino acids 334 to 354 (21 residues), see Phobius details PF03929: PepSY_TM" amino acids 12 to 357 (346 residues), 179.6 bits, see alignment E=6.5e-57

Best Hits

KEGG orthology group: None (inferred from 48% identity to rru:Rru_A2394)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (378 amino acids)

>MPMX19_03098 hypothetical protein (Azospirillum sp. SherDot2)
MSGGKSRTRLWFLWHSWLAMPIWAFLFFICVTGTIAVVSTEITWLVDPSMRASGEGQPLP
PSALIAAAEAAAPGGQVGSLSWGGSHMAVGAEMALPDGTFTTAWVNPVTGTVQGLSPGNS
FRQFIRALHGWLMTFPTGWYLVTALAIPLAGSLVTGLVVYKRFWKSFYQPRIRWKQAPRV
MWGDLHRVAGTWSIWFIAVISVTSLWFLIYIALFHLGIGLGGGKAPVMVARDQIPVTAVR
PKTDADAVVAAAMAALPDMRLRYLRLPDTAYDTASVIGSSGQVPLLPDIVRVNPYTAEVI
VVEGGLEGASGVELTRTIMRALHTGDFGGLPVKLIWFAFGLLMSLLVFSGMLIWTKRTAR
ATVEAVRGLRTARASSNA