Protein Info for MPMX19_03056 in Azospirillum sp. SherDot2

Annotation: putative ABC transporter binding protein NosD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details TIGR04247: nitrous oxide reductase family maturation protein NosD" amino acids 31 to 437 (407 residues), 500.9 bits, see alignment E=1.7e-154 PF13229: Beta_helix" amino acids 87 to 226 (140 residues), 46.7 bits, see alignment E=2.8e-16 amino acids 159 to 272 (114 residues), 44.8 bits, see alignment E=1e-15 PF05048: NosD" amino acids 143 to 371 (229 residues), 165.7 bits, see alignment E=1.1e-52

Best Hits

KEGG orthology group: K07218, nitrous oxidase accessory protein (inferred from 67% identity to rce:RC1_3911)

Predicted SEED Role

"Nitrous oxide reductase maturation protein NosD" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (458 amino acids)

>MPMX19_03056 putative ABC transporter binding protein NosD (Azospirillum sp. SherDot2)
MFLRTATLLAAALALPAAALAATATVAPGGLEAALASAAPGDTLVLSAGVHPGPLTVRTP
VTLTGEPGAIIDGQGSGSTLTILAPNVTLRHLEIRNSGLSLIDQNAGVFLGKEARGAVVE
DNRLRDNLIGVYIWGAADSLVRRNDIVGRTDLRVSERGNGIQLWNAPGTRVLDNSVREGR
DGLFTTSSRKNVFSGNRFEHVRFAVHYMYTNDSELTDNVSVANNVGYAVMFSNNLLIRNN
RSRADREHGLMLNNANSSRIEGNVIEGRFAGALSDSGEALPDSDIPRDSEAMSDRLRSGT
WKCVFIYNANKNRFTGNRFDGCEIGVHFTAGSERNSLTGNAFIGNRTQVKYVGTRYLDWS
ENGRGNYWSDNAAFDLNGDGISDEPYRPNDVVDRVMWEYPAAKLLMNSPGVQVIRWAQKQ
FPALHPGGVIDSAPLMTPPPMPTLVQSAQSLNAERKQP