Protein Info for MPMX19_03043 in Azospirillum sp. SherDot2

Annotation: putative oxidoreductase YghA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 PF00106: adh_short" amino acids 58 to 244 (187 residues), 144.8 bits, see alignment E=4.6e-46 PF08659: KR" amino acids 59 to 236 (178 residues), 26 bits, see alignment E=1.7e-09 PF13561: adh_short_C2" amino acids 64 to 296 (233 residues), 182.7 bits, see alignment E=1.8e-57

Best Hits

Swiss-Prot: 58% identical to YGHA_ECO57: Uncharacterized oxidoreductase YghA (yghA) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 82% identity to sli:Slin_4034)

MetaCyc: 58% identical to NADP+-dependent aldehyde reductase (Escherichia coli K-12 substr. MG1655)
1.1.1.-

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (300 amino acids)

>MPMX19_03043 putative oxidoreductase YghA (Azospirillum sp. SherDot2)
MDRKDDTVTPQDPRTKYPRPPFNGQSQPWPGLARDMDPPPDHGETSYKGSGRLAGRRALI
TGGDSGMGRAAAIAYAREGADVAINYFPTEEPDAQDVVALIEEAGRKAVAIPGDLRDEEF
CKKLVADAVAGLGGLDIVVCNAARQQAFPSILDVSSEEFDATMKTNIYAPFWIIKAALPH
LKPGSVIIGTTSEQAYDPTPDLYAYAQTKAATMNYVKSLAKQLADKGIRVNGVAPGPIWT
PLQVSGGASQEKLKQFGSQTPFGRPGQPAELASIYVQLAAEDASFTTGHVYGAAGGSGQP