Protein Info for MPMX19_03009 in Azospirillum sp. SherDot2

Annotation: Erythritol catabolism regulatory protein EryD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF04198: Sugar-bind" amino acids 66 to 327 (262 residues), 183.6 bits, see alignment E=1.9e-58

Best Hits

KEGG orthology group: None (inferred from 62% identity to smd:Smed_3043)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>MPMX19_03009 Erythritol catabolism regulatory protein EryD (Azospirillum sp. SherDot2)
MRNGTSEGPEDEVLMARAAWLYYVGGLNQEAAARRLGVTRARVNKLLSDARDSGMVSITI
NSANVGLLPVEEAIRERYGLDVCICTPALTQDAGGDRDDALLAPFAFRAVGAAAAAHLRR
HLAETEEAVVGTGWGRTLEQMTLQMAGVSAPRAKFISLMGSLTARSAYNPFDVVHALART
TGAEGYFLPVPFIADSLEARDVLLSQQSVQTALQLARSTTVAYISIGELREASLLRTQGM
ISATELAELRAAGAVGDTNGLFFDRDGKAVDHPLNHRTLALGLDGLKQTYTVALVAGRTK
LQAARAFLASGVARGLIVDGDTALELVK