Protein Info for MPMX19_03007 in Azospirillum sp. SherDot2

Annotation: Arabinose import ATP-binding protein AraG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 PF00005: ABC_tran" amino acids 18 to 170 (153 residues), 78.7 bits, see alignment E=3.4e-26 amino acids 276 to 416 (141 residues), 27 bits, see alignment E=3.1e-10

Best Hits

Predicted SEED Role

"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (512 amino acids)

>MPMX19_03007 Arabinose import ATP-binding protein AraG (Azospirillum sp. SherDot2)
MEIHLADIAMQFPGTRALDGVDVVFRSDEVHGLIGENGAGKSTLVSILGGSLQPSGGTIA
VDGRSVRFGSPQDALSQGIAHVSQEGSLVPGLTGAENILLGVEPRRIGGMIRGSALKAQA
AALLATWFPQVEIDLGCPVAELPMADRKVIEIVRALRGSARIVILDEPTATLPAREKEQL
WAIIRTLPARGVGVVLISHFLSEIKALSHRITVLRDGRRICTESADALDEQMLVDMMLRR
SGSGPQRKSEEAARASRGEIVLDIRDWRVGRLHVPRFTLHAGEIVGLIGLTGAGHFGFAR
SLHSPSGVRCAGLAVGGQPVKPGPPAHMQAAGIALVPDHRMEYALIGEWTLRENLAMVHP
GHGAIAAGILSPGREEAESRRIMRLLNVKAHSSGQLLRTLSGGNKQKISIGKWLYGAEGR
YRVMIFIEPTEGVDIGAKAEIYAEMRRLAATGVGIVIASSDLLEIEALAHRVIPFHHLRP
GPEIPGTGFSESAFIAAISGAVPETAKSGIPA