Protein Info for MPMX19_03001 in Azospirillum sp. SherDot2
Annotation: Ribulokinase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 75% identity to smd:Smed_3035)Predicted SEED Role
"Xylulose kinase (EC 2.7.1.17)" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization or Xylose utilization (EC 2.7.1.17)
MetaCyc Pathways
- superpathway of glucose and xylose degradation (15/17 steps found)
- D-xylose degradation I (2/2 steps found)
- D-arabinitol degradation I (1/2 steps found)
- xylitol degradation I (1/2 steps found)
- superpathway of pentose and pentitol degradation (14/42 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 2.7.1.17
Use Curated BLAST to search for 2.7.1.17
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (509 amino acids)
>MPMX19_03001 Ribulokinase (Azospirillum sp. SherDot2) MYYLTADGGTESLRARIYDLTGRCLGQKAVAYDTQFGPGARAEQDPEDWWRALADATRGA VADAGIDAAEIEAMCFATTCCTVVALDADGRALRPALLWMDVRAHAEAEAVLATGDPALK INGAGRGPVSAEWMIPKALWLKRNEPATFAAAHTICEYQDFLTLRLTGERVASLDNAGLR WHYSSRDGGWARGILKALDLEELEGKWPARVLAPGAVVGTLRPEAAAALGLRPSVKLVQG GADALIGMIGLGVAQPGQLALITGSSHLQFGVTEAPLHAPGVWGSYPDIVYPGRWIVEGG QTSTGSIVNWLRRFSGGTLDLAALNAKAAALEPGSDGLLVLDHFQGNRTPYTDPLSRGAI VGLTLAHEPHHVFRAIVEGIGFGTRAILDAFKAGGYSSTEITVGGGATASQLWMQIHADT AGLPVRIPASADAPSTGSAVLAAHGAGRFASIDEGIAAMVRPGTSIEPRPRETALYQEIY QRYLALYPALKGVLNGPVPAPAPVREPAA