Protein Info for MPMX19_02947 in Azospirillum sp. SherDot2

Annotation: Ribulose bisphosphate carboxylase small chain, chromosomal

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 63% identical to RBSC_CUPNE: Ribulose bisphosphate carboxylase small chain, chromosomal (cbxSC) from Cupriavidus necator

KEGG orthology group: K01602, ribulose-bisphosphate carboxylase small chain [EC: 4.1.1.39] (inferred from 80% identity to rce:RC1_4062)

Predicted SEED Role

"Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39)" in subsystem CO2 uptake, carboxysome or Calvin-Benson cycle or Carboxysome or Photorespiration (oxidative C2 cycle) (EC 4.1.1.39)

MetaCyc Pathways

Rubisco shunt (10/10 steps found)
Calvin-Benson-Bassham cycle (12/13 steps found)
ethene biosynthesis V (engineered) (20/25 steps found)
1-butanol autotrophic biosynthesis (engineered) (21/27 steps found)
photosynthetic 3-hydroxybutanoate biosynthesis (engineered) (20/26 steps found)
oxygenic photosynthesis (13/17 steps found)
nucleoside and nucleotide degradation (archaea) (4/10 steps found)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.1.1.39

Use Curated BLAST to search for 4.1.1.39

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (146 amino acids)

>MPMX19_02947 Ribulose bisphosphate carboxylase small chain, chromosomal (Azospirillum sp. SherDot2)
MRLTQGQFSFLPDLTDEEITKQVQYALDQGWAVAVEFTDDPHPRNSYWTMWGNPMFDLRD
AKGVTMEIDACRTAHPEQYVKVLAFDSSHGFETVRMSFLINRPAEEPGFELLRSEGPGRR
IGYTVRSYATGRPAGQRYGGETRHEP