Protein Info for MPMX19_02932 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 271 transmembrane" amino acids 31 to 55 (25 residues), see Phobius details amino acids 67 to 89 (23 residues), see Phobius details amino acids 110 to 136 (27 residues), see Phobius details amino acids 143 to 166 (24 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 234 to 254 (21 residues), see Phobius details TIGR03861: alcohol ABC transporter, permease protein" amino acids 7 to 258 (252 residues), 390.7 bits, see alignment E=1.6e-121 PF01061: ABC2_membrane" amino acids 10 to 227 (218 residues), 100.5 bits, see alignment E=1.5e-32 PF12698: ABC2_membrane_3" amino acids 52 to 248 (197 residues), 64.3 bits, see alignment E=1.7e-21 PF12679: ABC2_membrane_2" amino acids 90 to 218 (129 residues), 35.3 bits, see alignment E=1.2e-12

Best Hits

KEGG orthology group: K09686, antibiotic transport system permease protein (inferred from 73% identity to msl:Msil_0010)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (271 amino acids)

>MPMX19_02932 hypothetical protein (Azospirillum sp. SherDot2)
MSAATYWYCLRSIIVREGLRFLHQRERFFAALVRPLVWLAIFAVGFRAVLGVSIIPPYET
YILYDEYVVPGLVAMIQLFNGMQNSLSMVYDREMGSMRTLLVSPLPRWYLLVAKLLAGVA
VSIAQVYVFLGIAWLWGVEPPPLGYLAALPALLLSGLMLGALGLLLSSFVRQLENFAGVM
NFVIFPMFFASSALYPLWRIREGSPALYQIAAWNPFTQAVELIRFSLYLRVDVAALLWVT
GCLALFLGAAVLAYDPGRGFWARRGGPAEQA