Protein Info for MPMX19_02931 in Azospirillum sp. SherDot2

Annotation: Linearmycin resistance ATP-binding protein LnrL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 TIGR03864: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system" amino acids 21 to 256 (236 residues), 349.7 bits, see alignment E=3.7e-109 PF00005: ABC_tran" amino acids 37 to 180 (144 residues), 116.4 bits, see alignment E=1.6e-37

Best Hits

KEGG orthology group: None (inferred from 60% identity to gbe:GbCGDNIH1_1916)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>MPMX19_02931 Linearmycin resistance ATP-binding protein LnrL (Azospirillum sp. SherDot2)
MYEAAIPAEPPPIPAIHGPPALAVEELSHNFGKRVALDRVSFAVAPGGFTMLLGLNGAGK
TTLFSLITRLYSNRTGAIRLFGFDLRRQPTRALERIGVVFQQPTLDLDLTVRQNLHYHGG
LHGMSPSDCEARAREELARIGLADRGDDKVRALSGGQRRRVEIARALLHRPSLLLLDEPT
VGLDADSRRHILTHVRALCREQGLAVLWATHLMDEATDEDSVAVLHQGRLRASGTVRRVC
AETATAALPAAFAALTTGEHRP