Protein Info for MPMX19_02897 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 107 to 131 (25 residues), see Phobius details amino acids 152 to 176 (25 residues), see Phobius details amino acids 232 to 252 (21 residues), see Phobius details amino acids 265 to 287 (23 residues), see Phobius details amino acids 299 to 323 (25 residues), see Phobius details amino acids 329 to 350 (22 residues), see Phobius details TIGR02484: CitB domain protein" amino acids 11 to 373 (363 residues), 448.5 bits, see alignment E=9.8e-139

Best Hits

KEGG orthology group: K13795, citrate/tricarballylate utilization protein (inferred from 79% identity to azl:AZL_b02760)

Predicted SEED Role

"TcuB: works with TcuA to oxidize tricarballylate to cis-aconitate" in subsystem Tricarballylate Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>MPMX19_02897 hypothetical protein (Azospirillum sp. SherDot2)
MPCADDTQRIAAEARRALDICNACQFCDGYCAVFPALKSRRLVSAEDLTFLSNLCHNCRS
CYHACQYAPPHAFDLNLPKSLSLVRQQSYRDHVWPPLLRGRLPHAGWPAVAVMAAIILSA
VALVVVPALLWVPTETLFGRQSGPGAFYRLVPWRVIAGVAGGAMLWSLLAIGFSVASFWR
GMGPAPAGVPLLPALRDALSDAATLRNLGGGGVGCNDRDEDFSQARRRCHHALFYGVMLC
FASTSVATVYDHLLGWPAPYPLTSLPVLFGSLGGVGMVIGTAGLALLKLRADPAPVAANL
TGADCALLALLFLVAASGLGLLALRETAAMGPLLLVHLGLVLGWFATLPYSKSLHAPFRF
AALLRAAMEQRGRG