Protein Info for MPMX19_02867 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 558 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 186 to 207 (22 residues), see Phobius details PF17203: sCache_3_2" amino acids 40 to 183 (144 residues), 50.6 bits, see alignment E=5.5e-17 PF17201: Cache_3-Cache_2" amino acids 70 to 184 (115 residues), 103.1 bits, see alignment E=4.5e-33 PF17202: sCache_3_3" amino acids 79 to 183 (105 residues), 113.9 bits, see alignment E=1.1e-36 PF00672: HAMP" amino acids 205 to 255 (51 residues), 37.4 bits, see alignment 6.6e-13 PF00015: MCPsignal" amino acids 370 to 522 (153 residues), 108.4 bits, see alignment E=9.1e-35

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 48% identity to rpx:Rpdx1_0005)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (558 amino acids)

>MPMX19_02867 hypothetical protein (Azospirillum sp. SherDot2)
MTIRALSLAGKTVMLCGGGLLLLAFSTFGVNEFLLTSYADRVAMERQETNMRVAWDVLNQ
YGQAFDAHDGKLFAGERALNDFFEPVDRVKRLVGGTATLFMGDRRVATNVLKPDGGRAVG
TTLAKGPVYDAVLGRGVPYRGQADILGTPFYTAYDPIKAPDGRVVGILYVGIPKAEFFAA
IRDTQAMIAVISAIVTLLVAAGCLLLARRMFRPLSGIRVAMEELARGNLSAAIPALGRKD
EIGGMARALGVFKENALEVAQLHEAQAAERARSVQERRAAMEEVAQSFEGSLLGVVGVLS
ATTTQLQANAQRLHDIAETGSVRAHTVSTAAGEASDDVRTVAGAAEEMSSSIGEVGRQVE
ESARMVRSAVEEVTRTNHTMDGLAAAASKIGEVVTLIQDIAAQTNLLALNATIEAARAGE
AGKGFAVVAGEVKTLANQTARATDDIARQVAEIQAVTGHAVEAIEGIGRTVLSVSDLVGR
IAVSADHQSATTADIAQSVQRAADRTTEVTHNIEEVSQSAHETGVMASEVRAAAADLGRQ
ALSLRDQAEEFLRHVRAA