Protein Info for MPMX19_02798 in Azospirillum sp. SherDot2

Annotation: Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 32 to 373 (342 residues), 219.7 bits, see alignment E=1.4e-68 PF13433: Peripla_BP_5" amino acids 34 to 358 (325 residues), 49.8 bits, see alignment E=4.4e-17 PF01094: ANF_receptor" amino acids 63 to 253 (191 residues), 39.5 bits, see alignment E=5.7e-14

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 33% identity to bxe:Bxe_C0219)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (380 amino acids)

>MPMX19_02798 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein (Azospirillum sp. SherDot2)
MFGRRTLLAAAAALALIIPVAGTTGAQAQQPPVRIALIGPMSGTGAFEGQLGLEGAQAMA
AVINAKGGVAGGRKIELLTYDDKGSPEDGVSAAKRAMEQDNVDMIIGGWFSAVALSMKEV
TRDKIITVMTSSQHPKVTEEGHKYLFRLNATSAMMSEFYSKAICDRIKPKSIAFMNVNDD
WGRLELDNYTKLLTGCGIEVKGHEFYNRTDTDFTTALTKLKSLNADAIYVAAINTSQGAT
IYRQIKQTGYRGKVIASAGNMNPKLVELSGNSLEQVYSASPFTEDGAAPSLKPWLDQYRK
DYKNDPSFIAALGAQAVQTLAFGVDAAGGDPRAYDKIAAALKSQAVPTVMGELRFSDKGQ
ASQAIHLVQVQKKQIVSVRD