Protein Info for MPMX19_02777 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 19 to 40 (22 residues), see Phobius details amino acids 48 to 79 (32 residues), see Phobius details amino acids 95 to 118 (24 residues), see Phobius details amino acids 124 to 144 (21 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 226 to 247 (22 residues), see Phobius details amino acids 259 to 286 (28 residues), see Phobius details amino acids 298 to 317 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 47 to 307 (261 residues), 144.1 bits, see alignment E=2.5e-46

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 37% identity to tde:TDE2365)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>MPMX19_02777 hypothetical protein (Azospirillum sp. SherDot2)
MNAFETAAPADGLTRRRGLLVPALILLLVFAALPAVLAGFDKGYFYQIANLALIFVLLSA
SMHLVTGVAGLLHLGHAAFYGVGAYTAALLTSKLGLGFTVTLPLSGLVAALVAFLVALPT
MRLVSIYFAVATLAIGQMLYLVMLNWVDFTKGPNGIIVSKGFELFGFGLSGRLAAYYTVA
TVVTLSVIAIGRLSHSYYGNALRSIREDDQCADAMGVSTVRLKMEAFTLSAFFAGVAGGL
WAHMTGYISPGDFKFSESILILAMVVVGGLGSLPGAVIGALLLILLPEGLRGLGDFRNIM
VGLVMFLSILLLPKGLLGEVSALRLVRQQLGAAWRTTGPANGKGEGIGWR